How folder structure is handled
If you upload a folder with subfolders, the ZIP preserves that structure. A file at reports/january/sales.xlsx converts to reports/january/sales.md inside the archive. Flat uploads get a flat ZIP. No surprises.
File name conflicts
If two source files would produce the same output name — for example, notes.docx and notes.pdf both becoming notes.md — the second one gets a numeric suffix (notes-2.md) instead of silently overwriting.